clearex.segmentation.regions

Functions

get_bounding_box(image_shape, roi_slice[, ...])

Expand a regionprops slice tuple (z, y, x) by buffer voxels, clamped to image bounds.

clearex.segmentation.regions.get_bounding_box(image_shape, roi_slice, buffer=0)

Expand a regionprops slice tuple (z, y, x) by buffer voxels, clamped to image bounds.

Parameters:

• image_shape (tuple of int) – Shape of the image (z, y, x).

• roi_slice (tuple of slice) – Original regionprops slice (z, y, x).

• buffer (int) – Number of voxels to expand the slice in each direction.

Returns:

(sz, sy, sx) expanded and clamped slices.

Return type:

tuple of slice