Case Studies
============

Light sheet microscopy is a very versatile technique. Here we present some case studies that demonstrate how **navigate** can be used to configure and acquire data from different types of light sheet microscopes. We also provide information on how to use the REST-API to communicate with other software, such as ilastik, for image segmentation and analysis, and how to use the feature container to execute multiscale imaging and smart microscopy.

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.. toctree::
   :caption: Setting Up a Microscope
   :maxdepth: 2

   setup_voodoo

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.. toctree::
   :caption: Operating a Microscope
   :maxdepth: 2

   acquire_mesospimbt
   acquire_CT-ASLM-V1_and_CT-ASLM-V2
   acquire_exASLM

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.. toctree::
   :caption: Using the REST-API
   :maxdepth: 2

   ilastik_segmentation

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.. toctree::
   :caption: Performing Smart Microscopy
   :maxdepth: 2

   06_human_in_the_loop/human_in_the_loop
   07_smart_tiling/smart_tiling
   08_smart_object_detection/smart_object_detection