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Getting Started

  • Quick Start Guide
  • Software Installation
  • I Want To…

User Guide

  • Supported Hardware
  • Supported File Formats
  • User Interface Walkthrough
  • Setting Up A Microscope
    • Configuration Overview
    • Multiple Cameras
    • Hardware Troubleshooting
  • Acquiring Data
  • Case Studies

Development

  • Software Architecture
  • Contributing Guidelines
  • Feature Container
  • REST-API
  • Plugin Architecture

Plugins

  • navigate Plugin Template
  • navigate Confocal Projection
  • navigate at Scale
  • navigate Constant Velocity Acquisition
  • navigate MMCore
  • navigate ilastik Server
  • navigate Photoactivation

Reference

  • Implemented Microscopes
  • Software API
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  • Setting Up A Microscope
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Setting Up A Microscope

  • Configuration Overview
    • Initial Configuration
    • Experiment File
    • Waveform Constants File
    • Waveform Templates File
    • Rest API Configuration File
  • Multiple Cameras
    • Enabling Multi-Camera Operation
    • Disabling Multi-Camera Operation
  • Hardware Troubleshooting
    • Intermittent USB Connectivity
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