navigate Logo

Getting Started

  • Computer Considerations
  • Computer Power Configuration
  • Software Installation
  • Launching Navigate
  • Configuring Navigate
  • Acquiring Data
  • Smart Acquisition Routines

User Guide

  • Supported Hardware
  • Supported File Formats
  • User Interface Walkthrough
  • Setting Up a Microscope
  • Acquiring Data
  • Case Studies

Development

  • Contributing Guidelines
  • Developer Install
  • Software Architecture
  • Developer Architecture Concepts
  • Feature Container
  • REST API
  • Plugin Architecture
  • Adding New Hardware

Troubleshooting & Known Issues

  • Troubleshooting
  • Known Issues

Plugins

  • navigate Plugin Template
  • navigate Confocal Projection
  • navigate at Scale
  • navigate Constant Velocity Acquisition
  • navigate MMCore
  • navigate ilastik Server
  • navigate Photoactivation

Reference

  • Implemented Microscopes
  • Software API
    • navigate.config
    • navigate.controller
      • navigate.controller.configuration_controller
      • navigate.controller.configurator
      • navigate.controller.controller
      • navigate.controller.sub_controllers
        • navigate.controller.sub_controllers.acquire_bar
        • navigate.controller.sub_controllers.adaptive_optics
        • navigate.controller.sub_controllers.autofocus
        • navigate.controller.sub_controllers.camera_map
        • navigate.controller.sub_controllers.camera_settings
        • navigate.controller.sub_controllers.camera_view
        • navigate.controller.sub_controllers.channels_settings
        • navigate.controller.sub_controllers.channels_tab
        • navigate.controller.sub_controllers.diagnostics_popup
        • navigate.controller.sub_controllers.feature_advanced_setting
        • navigate.controller.sub_controllers.features_popup
        • navigate.controller.sub_controllers.gui
        • navigate.controller.sub_controllers.histogram
        • navigate.controller.sub_controllers.ilastik
        • navigate.controller.sub_controllers.keystrokes
        • navigate.controller.sub_controllers.menus
        • navigate.controller.sub_controllers.microscope_popup
        • navigate.controller.sub_controllers.multiposition
        • navigate.controller.sub_controllers.plugins
        • navigate.controller.sub_controllers.stages
        • navigate.controller.sub_controllers.stages_advanced
        • navigate.controller.sub_controllers.tiling
        • navigate.controller.sub_controllers.waveform_popup
        • navigate.controller.sub_controllers.waveform_tab
      • navigate.controller.thread_pool
    • navigate.controller.configurator
    • navigate.log_files
    • navigate.model
    • navigate.tools
    • navigate.view
navigate
  • Software API
  • navigate.controller
  • navigate.controller.sub_controllers
  • navigate.controller.sub_controllers.features_popup
  • navigate.controller.sub_controllers.features_popup.FeaturePopupController
  • View page source

navigate.controller.sub_controllers.features_popup.FeaturePopupController

class navigate.controller.sub_controllers.features_popup.FeaturePopupController(view, parent_controller, feature_list_id=0)

Bases: GUIController

Controller for feature list popup

__init__(view, parent_controller, feature_list_id=0)

Initialize the controller

Parameters:
  • view (navigate.view.popups.feature_list_popup.FeatureListPopup) – The view of the controller

  • parent_controller (navigate.controller.main_controller.MainController) – The parent controller

  • feature_list_id (int, optional) – The id of the feature list, by default 0

Methods

__init__(view, parent_controller[, ...])

Initialize the controller

add_feature_list()

Add the feature list

cancel_acquisition()

Cancel the acquisition

close_child_popups()

Close child config popups

execute(command, *args)

This function is called when a command is passed from a child process.

exit_func(*args)

Exit the popup

initialize()

This function is called when the controller is initialized

populate_feature_list(feature_list_id)

Populate the feature list

register_event_listener(event_name, ...)

Register event listener in the parent_controller

set_experiment_values()

Sets values of widgets based on experiment setting

show_verbose_info(*info)

Prints verbose information to the console

update_experiment_values(*args)

Collects all the values of widgets

update_feature_list()

Update the feature list

verify_feature_list()

Verify the feature list

Attributes

custom_events

Custom events for the controller

feature_list_id

The id of the feature in the feature list.

features

The list of feature names.

feature_structure

The list of feature structure.

add_feature_list()

Add the feature list

cancel_acquisition()

Cancel the acquisition

close_child_popups()

Close child config popups

execute(command, *args)

This function is called when a command is passed from a child process.

Parameters:
  • command (str) – command name

  • args (tuple) – command arguments

exit_func(*args)

Exit the popup

initialize()

This function is called when the controller is initialized

This function initializes GUI based on configuration setting parameter: configuration_controller set range value for entry or spinbox widgets; add values to combobox get other necessary information for configuration.yml

populate_feature_list(feature_list_id)

Populate the feature list

Parameters:

feature_list_id (int) – The id of the feature list

register_event_listener(event_name, event_handler)

Register event listener in the parent_controller

Parameters:
  • event_name (str) – event name

  • event_handler (function) – event handler

set_experiment_values()

Sets values of widgets based on experiment setting

setting_dict is a dictionary

show_verbose_info(*info)

Prints verbose information to the console

Parameters:

info (tuple) – information to be printed

update_experiment_values(*args)

Collects all the values of widgets

setting_dict is a reference of experiment dictionary update the dictionary directly

update_feature_list()

Update the feature list

verify_feature_list()

Verify the feature list

Returns:

feature_list – The feature list

Return type:

list

property custom_events

Custom events for the controller

feature_list_id

The id of the feature in the feature list.

Type:

int

feature_structure

The list of feature structure.

Type:

list

features

The list of feature names.

Type:

list

parent_controller

parent controller

Type:

Controller

view

GUI view

Type:

tkinter.Tk

Previous Next

© Copyright 2026, Dean Lab, UT Southwestern Medical Center.