Setting Up a Microscope

This section covers software-level microscope setup, including coordinate conventions, configuration files, multi-camera operation, and SNR map setup.

• Microscope Coordinate System
  • Problem And Motivation
  • Standard Light-Sheet Microscope
  • Multi-Sided Microscope Variants
  • Oblique-Plane Microscopes
• Advanced Configuration
  • Before You Continue
  • Configuration Files At A Glance
  • Safe Editing Notes
  • Microscope Configurations
  • Microscope Inheritance
  • Microscope Hardware Specification
  • Experiment File
  • Waveform Constants File
  • Waveform Templates File
  • REST API Configuration File
  • Post-Edit Validation Checklist
• Multiple Cameras
  • Enabling Multi-Camera Operation
  • Disabling Multi-Camera Operation
• Signal-to-Noise Visualization Mode
  • Acquiring Offset And Variance Maps