navigate Logo

Getting Started

  • Quick Start Guide
  • Software Installation
  • I Want To…

User Guide

  • Supported Hardware
  • Supported File Formats
  • User Interface Walkthrough
  • Setting Up A Microscope
  • Acquiring Data
  • Case Studies

Development

  • Contributing Guidelines
  • Developer Install
  • Software Architecture
  • Feature Container
  • REST-API
  • Plugin Architecture

Troubleshooting & Known Issues

  • Troubleshooting
  • Known Issues

Plugins

  • navigate Plugin Template
  • navigate Confocal Projection
  • navigate at Scale
  • navigate Constant Velocity Acquisition
  • navigate MMCore
  • navigate ilastik Server
  • navigate Photoactivation

Reference

  • Implemented Microscopes
  • Software API
navigate
  • navigate.controller.sub_controllers.histogram.HistogramController
  • View page source

navigate.controller.sub_controllers.histogram.HistogramController

class navigate.controller.sub_controllers.histogram.HistogramController(histogram: HistogramFrame, parent_controller: Any)

Bases: object

Histogram controller

__init__(histogram: HistogramFrame, parent_controller: Any) → None

Initialize the histogram controller

Parameters:
  • histogram (HistogramFrame) – Histogram view

  • parent_controller (Any) – Main controller.

Methods

__init__(histogram, parent_controller)

Initialize the histogram controller

histogram_popup(event)

Histogram popup menu

populate_histogram(image)

Populate the histogram in a dedicated thread.

update_experiment()

Update the experiment.yaml file

update_scale()

Update the scale of the histogram

Attributes

histogram

Histogram view

parent_controller

Main controller

ax

The histogram figure.

histogram_enabled

Histogram enabled

log_x

Logarithmic X-axis

log_y

Logarithmic Y-axis

menu

Histogram popup menu

histogram_thread

Histogram thread

lock

Lock

histogram_popup(event: Event) → None

Histogram popup menu

Parameters:

event (tk.Event) – Event

populate_histogram(image: SharedNDArray) → None

Populate the histogram in a dedicated thread.

Parameters:

image (SharedNDArray) – Image data

update_experiment() → None

Update the experiment.yaml file

update_scale() → None

Update the scale of the histogram

ax

The histogram figure.

Type:

FigureBase

histogram

Histogram view

Type:

HistogramFrame

histogram_enabled

Histogram enabled

Type:

bool

histogram_thread

Histogram thread

Type:

threading.Thread

lock

Lock

Type:

threading.Lock

log_x

Logarithmic X-axis

Type:

bool

log_y

Logarithmic Y-axis

Type:

bool

menu

Histogram popup menu

Type:

tk.Menu

parent_controller

Main controller

Type:

MainController


© Copyright 2025, Dean Lab, UT Southwestern Medical Center.