navigate.controller.sub_controllers.ilastik.IlastikPopupController

class navigate.controller.sub_controllers.ilastik.IlastikPopupController(view, parent_controller, service_url)

Bases: GUIController

Ilastik popup controller

__init__(view, parent_controller, service_url)

Initialize the ilastik popup controller

Parameters:

• view (IlastikPopupView) – ilastik popup view

• parent_controller (MainController) – main controller

• service_url (str) – url of the navigate_server for ilastik

Methods

__init__(view, parent_controller, service_url)	Initialize the ilastik popup controller
confirm_setting()	Confirm settings
execute(command, *args)	This function is called when a command is passed from a child process.
initialize()	This function is called when the controller is initialized
load_project()	Load ilastik project file.
register_event_listener(event_name, ...)	Register event listener in the parent_controller
set_experiment_values()	Sets values of widgets based on experiment setting
show_verbose_info(*info)	Prints verbose information to the console
showup([popup_window])	Show the ilastik popup window
toggle_display()	Toggle display of ilastik segmentation results
toggle_label(label_id)	Toggle label status
toggle_mark_position()	Toggle mark position of ilastik segmentation results
update_experiment_values()	Collects all the values of widgets
update_project(filename, label_dict)	Update project file name and labels

Attributes

custom_events	Custom events for the controller
service_url	url of the navigate_server for ilastik
project_filename	ilastik project file name
show_segmentation_flag	show segmentation flag
mark_position_flag	mark position flag
label_dict	label dictionary

confirm_setting()

Confirm settings

Tell the model which labels will be used activate features containing ilastik

execute(command, *args)

This function is called when a command is passed from a child process.

Parameters:

• command (str) – command name

• args (tuple) – command arguments

initialize()

This function is called when the controller is initialized

This function initializes GUI based on configuration setting parameter: configuration_controller set range value for entry or spinbox widgets; add values to combobox get other necessary information for configuration.yml

load_project()

Load ilastik project file.

register_event_listener(event_name, event_handler)

Register event listener in the parent_controller

Parameters:

• event_name (str) – event name

• event_handler (function) – event handler

set_experiment_values()

Sets values of widgets based on experiment setting

setting_dict is a dictionary

show_verbose_info(*info)

Prints verbose information to the console

Parameters:

info (tuple) – information to be printed

showup(popup_window=None)

Show the ilastik popup window

This function will let the popup window show in front.

Parameters:

popup_window (IlastikPopupView, optional) – ilastik popup window, by default None

toggle_display()

Toggle display of ilastik segmentation results

toggle_label(label_id)

Toggle label status

Parameters:

label_id (int) – label id

toggle_mark_position()

Toggle mark position of ilastik segmentation results

update_experiment_values()

Collects all the values of widgets

setting_dict is a reference of experiment dictionary update the dictionary directly

update_project(filename, label_dict)

Update project file name and labels

Parameters:

• filename (str) – project file name

• label_dict (dict) – label dictionary

property custom_events

Custom events for the controller

label_dict

label dictionary

Type:

dict

mark_position_flag

mark position flag

Type:

bool

parent_controller

parent controller

Type:

Controller

project_filename

ilastik project file name

Type:

str

service_url

url of the navigate_server for ilastik

Type:

str

show_segmentation_flag

show segmentation flag

Type:

bool

view

GUI view

Type:

tkinter.Tk