Getting Started

Quick Start Guide
Software Installation
I Want To…

User Guide

Supported Hardware
Supported File Formats
User Interface Walkthrough
Setting Up A Microscope
Acquiring Data
Case Studies

Development

Software Architecture
Contributing Guidelines
Feature Container
REST-API
Plugin Architecture

Plugins

navigate Plugin Template
navigate Confocal Projection
navigate at Scale
navigate Constant Velocity Acquisition
navigate MMCore
navigate ilastik Server
navigate Photoactivation

Reference

Implemented Microscopes
Software API

navigate

Software API
navigate.model
navigate.model.analysis
navigate.model.analysis.image_contrast
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navigate.model.analysis.image_contrast

Functions

fast_normalized_dct_shannon_entropy(...)

Calculates the entropy of an image.

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