Getting Started

Computer Considerations
Computer Power Configuration
Software Installation
Launching Navigate
Configuring Navigate
Acquiring Data
Smart Acquisition Routines

User Guide

Supported Hardware
Supported File Formats
User Interface Walkthrough
Setting Up a Microscope
Acquiring Data
Case Studies

Development

Contributing Guidelines
Developer Install
Software Architecture
Developer Architecture Concepts
Feature Container
REST API
Plugin Architecture
Adding New Hardware

Troubleshooting & Known Issues

Troubleshooting
Known Issues

Plugins

navigate Plugin Template
navigate Confocal Projection
navigate at Scale
navigate Constant Velocity Acquisition
navigate MMCore
navigate ilastik Server
navigate Photoactivation

Reference

Implemented Microscopes
Software API

navigate

Software API
navigate.model
navigate.model.analysis
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navigate.model.analysis

This package provides the analysis routines for the navigation software.

Modules

`boundary_detect`
`camera`
`image_contrast`

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