navigate Logo

Getting Started

  • Quick Start Guide
  • Software Installation
  • I Want To…

User Guide

  • Supported Hardware
  • Supported File Formats
  • User Interface Walkthrough
  • Setting Up A Microscope
  • Acquiring Data
  • Case Studies

Development

  • Contributing Guidelines
  • Developer Install
  • Software Architecture
  • Feature Container
  • REST-API
  • Plugin Architecture

Troubleshooting & Known Issues

  • Troubleshooting
  • Known Issues

Plugins

  • navigate Plugin Template
  • navigate Confocal Projection
  • navigate at Scale
  • navigate Constant Velocity Acquisition
  • navigate MMCore
  • navigate ilastik Server
  • navigate Photoactivation

Reference

  • Implemented Microscopes
  • Software API
    • navigate.config
    • navigate.controller
    • navigate.log_files
    • navigate.model
      • navigate.model.analysis
      • navigate.model.concurrency
      • navigate.model.data_sources
      • navigate.model.device_startup_functions
      • navigate.model.devices
        • navigate.model.devices.camera
        • navigate.model.devices.daq
        • navigate.model.devices.device_types
        • navigate.model.devices.filter_wheel
        • navigate.model.devices.galvo
        • navigate.model.devices.laser
        • navigate.model.devices.mirror
        • navigate.model.devices.objectives
        • navigate.model.devices.remote_focus
        • navigate.model.devices.shutter
        • navigate.model.devices.stage
        • navigate.model.devices.zoom
      • navigate.model.features
      • navigate.model.metadata_sources
      • navigate.model.microscope
      • navigate.model.model
      • navigate.model.plugins_model
      • navigate.model.waveforms
    • navigate.tools
    • navigate.view
navigate
  • Software API
  • navigate.model
  • navigate.model.devices
  • navigate.model.devices.remote_focus
  • navigate.model.devices.remote_focus.base
  • navigate.model.devices.remote_focus.base.RemoteFocusBase
  • View page source

navigate.model.devices.remote_focus.base.RemoteFocusBase

class navigate.model.devices.remote_focus.base.RemoteFocusBase(microscope_name: str, device_connection: Any, configuration: Dict[str, Any], *args, **kwargs)

Bases: object

RemoteFocusBase Class - Parent class for Remote Focusing Device.

__init__(microscope_name: str, device_connection: Any, configuration: Dict[str, Any], *args, **kwargs) → None

Initializes the RemoteFocusBase Class.

Parameters:
  • microscope_name (str) – Name of the microscope.

  • device_connection (Any) – Device connection object.

  • configuration (Dict[str, Any]) – Configuration dictionary.

Methods

__init__(microscope_name, device_connection, ...)

Initializes the RemoteFocusBase Class.

adjust(exposure_times, sweep_times[, offset])

Adjusts the remote focus waveform based on the readout time.

Attributes

device_connection

Device connection object.

configuration

Configuration dictionary.

microscope_name

Name of the microscope.

device_config

Remote focus device parameters.

sample_rate

Sample rate of the DAQ.

sweep_time

Sweep time of the DAQ.

camera_delay

Camera delay percent.

remote_focus_max_voltage

Remote focus max voltage.

remote_focus_min_voltage

Remote focus min voltage.

waveform_dict

Waveform dictionary.

adjust(exposure_times, sweep_times, offset=None)

Adjusts the remote focus waveform based on the readout time.

Parameters:
  • exposure_times (dict) – Dictionary of exposure times for each selected channel

  • sweep_times (dict) – Dictionary of sweep times for each selected channel

  • offset (float, optional) – Offset value for the remote focus waveform, by default None

Returns:

waveform – Waveform for the remote focus device.

Return type:

numpy.ndarray

camera_delay

Camera delay percent.

Type:

float

configuration

Configuration dictionary.

Type:

dict

device_config

Remote focus device parameters.

Type:

dict

device_connection

Device connection object.

Type:

Any

microscope_name

Name of the microscope.

Type:

str

remote_focus_max_voltage

Remote focus max voltage.

Type:

float

remote_focus_min_voltage

Remote focus min voltage.

Type:

float

sample_rate

Sample rate of the DAQ.

Type:

int

sweep_time

Sweep time of the DAQ.

Type:

float

waveform_dict

Waveform dictionary.

Type:

dict

Previous Next

© Copyright 2025, Dean Lab, UT Southwestern Medical Center.